Propagation of sequencing errors in base space to minimizer space We
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Cell-type-specific prediction of 3D chromatin organization enables high-throughput in silico genetic screening
A deep joint sparse non-negative matrix factorization framework for identifying the common and subject-specific functional units of tongue motion during speech - ScienceDirect
Minimizer-space de Bruijn graphs: Whole-genome assembly of long reads in minutes on a personal computer - ScienceDirect
In vivo hypermutation and continuous evolution
Barış EKIM, Research Assistant, Bachelor of Science, Massachusetts Institute of Technology, MA, MIT, Department of Electrical Engineering and Computer Science
Organization of Computer Systems: Processor & Datapath
Barış EKIM, Research Assistant, Bachelor of Science, Massachusetts Institute of Technology, MA, MIT, Department of Electrical Engineering and Computer Science
IJMS, Free Full-Text
PDF) Minimizer-space de Bruijn graphs: Whole-genome assembly of long reads in minutes on a personal computer
Barış EKIM, Research Assistant, Bachelor of Science, Massachusetts Institute of Technology, MA, MIT, Department of Electrical Engineering and Computer Science
Bonnie BERGER, Simons Professor of Mathematics, Massachusetts Institute of Technology, MA, MIT, Mathematics and CSAIL
Reconstruction of evolving gene variants and fitness from short sequencing reads
A guide to an efficient way to build neural network architectures- Part II: Hyper-parameter selection and tuning for Convolutional Neural Networks using Hyperas on Fashion-MNIST, by Shashank Ramesh
Visual example of the minimizer and open syncmer selection methods with
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